IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_lnc_RNA.nwk -s All_Species_m2_lnc_RNA.nexus --scf 100 --prefix concord_lnc_RNA -T 2
Seed:    965177 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:51:22 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_lnc_RNA.nexus ... Nexus format detected
Alignment has 26 sequences with 52205 columns, 27868 distinct patterns
51654 parsimony-informative, 0 singleton sites, 551 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  CA -> ActMar__CA
AldGig  CA -> AldGig__CA
ApaSpi  CA -> ApaSpi__CA
BatTri  NN -> BatTri__NN
CarIns  CA -> CarIns__CA
CheAbi  CA -> CheAbi__CA
CheMyd  CT -> CheMyd__CT
CheSer  CA -> CheSer__CA
ChrPic  CA -> ChrPic__CA
CuoAmb  CA -> CuoAmb__CA
CuoMcc  CA -> CuoMcc__CA
DerCor  CA -> DerCor__CA
DerMaw  CA -> DerMaw__CA
EmyOrb  NN -> EmyOrb__NN
EmySub  TA -> EmySub__TA
GopAga  CA -> GopAga__CA
MalTer  CA -> MalTer__CA
MauRee  CA -> MauRee__CA
MesTub  TA -> MesTub__TA
PelCas  CA -> PelCas__CA
PelSin  CT -> PelSin__CT
PlaMeg  CA -> PlaMeg__CA
PodExp  CA -> PodExp__CA
SteCar  CA -> SteCar__CA
TerCar  CA -> TerCar__CA
TraScr  CA -> TraScr__CA

            Gap/Ambiguity  Composition  p-value
   1  ActMar__CA    1.72%    failed      3.65%
   2  AldGig__CA    1.64%    failed      0.71%
   3  ApaSpi__CA    2.93%    passed     89.26%
   4  BatTri__NN   49.83%    failed      1.93%
   5  CarIns__CA   10.35%    failed      0.01%
   6  CheAbi__CA    6.58%    failed      0.45%
   7  CheMyd__CT    0.79%    failed      4.25%
   8  CheSer__CA    3.35%    passed     11.54%
   9  ChrPic__CA    0.38%    passed     19.62%
  10  CuoAmb__CA    2.21%    failed      0.66%
  11  CuoMcc__CA    0.75%    failed      0.30%
  12  DerCor__CA    1.59%    failed      3.06%
  13  DerMaw__CA    2.22%    passed     99.80%
  14  EmyOrb__NN   42.19%    failed      0.08%
  15  EmySub__TA    2.02%    passed      7.17%
  16  GopAga__CA    0.89%    failed      3.35%
  17  MalTer__CA    7.26%    passed     34.18%
  18  MauRee__CA    0.54%    failed      0.49%
  19  MesTub__TA    3.48%    passed     18.88%
  20  PelCas__CA    5.28%    failed      0.00%
  21  PelSin__CT    3.52%    passed     83.30%
  22  PlaMeg__CA    0.73%    passed      5.05%
  23  PodExp__CA   12.13%    failed      0.00%
  24  SteCar__CA    3.08%    passed     84.96%
  25  TerCar__CA    1.79%    failed      2.01%
  26  TraScr__CA    0.76%    passed     27.94%
****  TOTAL         6.46%  15 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_lnc_RNA.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.434 sec
Tree with concordance factors written to concord_lnc_RNA.cf.tree
Annotated tree (best viewed in FigTree) written to concord_lnc_RNA.cf.tree.nex
Tree with branch IDs written to concord_lnc_RNA.cf.branch
Concordance factors per branch printed to concord_lnc_RNA.cf.stat
Date and Time: Wed Apr  7 13:51:23 2021
